Mammalian developmental epigenetics

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Group Leader : Edith Heard
Heard_Team

Keywords

Epigenetics, X-chromosome inactivation, Chromatin, Mouse development, Nuclear organization

Plain english

In female mammals, one of the two X chromosomes is transcriptionally silenced during early development, a process that allows for dosage compensation between XX females and XY males. This process, known as X-chromosome inactivation, is a paradigm for developmental epigenetics.

 

 

 

 

 

 

 

Our goal

Understanding the regulation of gene expression during normal development is crucial for our comprehension of the alterations that can lead to cancer. Using the process of X-chromosome inactivation as a model system, we are developing approaches that allow us to gain insights into the fundamental mechanisms that underlie the dynamics of gene expression during development and cellular differentiation, as well as during tumorigenesis.

Females are mosaicsFemales are mosaics

Why study X-chromosome inactivation?

During development, specialized cell types emerge from a common single progenitor thanks to the expression of specific sets of genes, and the silencing of other genes. The differences between cell types are not due to DNA sequence differences but rather to what is often referred to as epigenetic variation.

The aim of the group of Edith Heard is to understand how cells can express their genomes differentially and in a stable, although sometimes reversible, manner during development, using X-chromosome inactivation as our model. X inactivation is a normal process, entailing the silencing of one of the two X chromosomes in female mammals. Once established the silent state is stably maintained through cell divisions and throughout the adult life, but can be reversed at certain stages of development, in the germ line and possibly in cancer cells. The inactive X provides a unique model of chromosome-wide epigenetic silencing.

The X-chromosome inactivation cycle in the mouseThe X-chromosome inactivation cycle in the mouse

Our questions

Studying the process of X chromosome inactivation allows to unveil molecular mechanisms involved in establishing, maintaining and reversing heterochromatin. We are interested in four principal questions :

  • What underlies the control of the initiation of X-chromosome inactivation?
  • How is transcriptional repression established?
  • How is the inactive state faithfully inherited through cellular division?  
  • How does tumor development affect maintenance of the inactive state of the X chromosome ?
Nucleus organisation at the onset of X-chromosome inactivationNucleus organisation at the onset of X-chromosome inactivation

Our tools

To analyse the early steps of X-chromosome inactivation we study mouse embryos and mouse embryonic stem cells. In parallel, we also use human cancer cell lines, as well as breast tumor samples in collaboration with doctors at the Curie Hospital, to investigate the mechanisms underlying epigenetic instability in the context of tumor development.

We couple classic molecular approaches with the analysis of cellular behavior at the single-cell level, in fixed or live samples, thanks to the the Institut Curie’s imaging platform and the state-of-the-art microscopy tools and expertise available within the Genetics and Developmental Biology department. These approaches are combined with large-scale genomic and epigenomic techniques made possible thanks to the various technological departments of the Institut Curie. Our work is especially focused on changes in chromatin structure and nuclear organization associated with heterochromatin formation, as well as the role of non-coding RNAs such as the remarkable Xist RNA which is expressed specifically from the inactive X and underlies the initiation of X inactivation.

Xist RNA coating of the inactive X chromosomeXist RNA coating of the inactive X chromosome

Key publications